Limmbo’s documentation

Table of contents

• Install
• Data input
  • Data input
    • Parse command-line arguments
    • Read data
    • Check data
• Variance decomposition
  • LiMMBo
  • Standard REML
• Association analysis
• Command-line interface
  • Association analysis
    • Basic required arguments
    • Output arguments
    • Optional files
    • Optional association parameters
    • Optional data processing parameters
    • Optional subsetting options
    • Plot arguments
    • Version
  • Variance decomposition
    • Basic required arguments
    • Optional files
    • Bootstrapping parameters
    • Optional data processing parameters
    • Optional subsetting options
    • Output arguments
    • Version
• Additional functions